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2011

Nikolaev SI, Rimoldi D, Iseli C, Valsesia A, Robyr D, Gehrig C, Harshman K, Guipponi M, Bukach O, Zoete V, Michielin O, Muehlethaler K, Speiser D, Beckmann JS, Xenarios I, Halazonetis TD, Jongeneel CV, Stevenson BJ, Antonarakis SE.
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma.
Nat Genet., 2011, 44, 133-9.


Grosdidier A, Zoete V, Michielin O.
SwissDock, a protein-small molecule docking web service based on EADock DSS.
Nucleic Acids Res., 2011, 39(Web Server issue), W270-7.


Grosdidier A, Zoete V, Michielin O.
Fast docking using the CHARMM force field with EADock DSS.
J Comput Chem., 2011, 32, 2149–2159.


Zoete V, Cuendet MA, Grosdidier A, Michielin O.
SwissParam: a fast force field generation tool for small organic molecules.
J Comput Chem., 2011, 32, 2359-68.


Cuendet MA, Zoete V, Michielin O.
How T cell receptors interact with peptide-MHCs: a multiple steered molecular dynamics study.
Proteins., 2011, 79, 3007-24.


Leimgruber A, Ferber M, Irving M, Hussain-Kahn H, Wieckowski S, Derré L, Rufer N, Zoete V, Michielin O.
TCRep 3D: an automated in silico approach to study the structural properties of TCR repertoires.
PLoS One., 2011, 6, e26301.


Speiser DE, Wieckowski S, Gupta B, Iancu EM, Baumgaertner P, Baitsch L, Michielin O, Romero P, Rufer N.
Single cell analysis reveals similar functional competence of dominant and nondominant CD8 T-cell clonotypes.
Proc Natl Acad Sci U S A., 2011, 108, 15318-23.


Rahm N, Yap M, Snoeck J, Zoete V, Muñoz M, Radespiel U, Zimmermann E, Michielin O, Stoye JP, Ciuffi A, Telenti A.
Unique spectrum of activity of prosimian TRIM5alpha against exogenous and endogenous retroviruses.
J Virol., 2011, 85, 4173-83.


Maillard PV, Zoete V, Michielin O, Trono D.
Homology-based identification of capsid determinants that protect HIV1 from human TRIM5α restriction.
J Biol Chem., 2011, 286, 8128-40.


Sala E, Guasch L, Iwaszkiewicz J, Mulero M, Salvadó MJ, Bladé C, Ceballos M, Valls C, Zoete V, Grosdidier A, Garcia-Vallvé S, Michielin O, Pujadas G.
Identification of human IKK-2 inhibitors of natural origin (Part II): in Silico prediction of IKK-2 inhibitors in natural extracts with known anti-inflammatory activity.
Eur J Med Chem., 2011, 46, 6098-103.


Strasser B, Iwaszkiewicz J, Michielin O, Mayer A.
The V-ATPase proteolipid cylinder promotes the lipid-mixing stage of SNARE-dependent fusion of yeast vacuoles.
EMBO J., 2011, 30, 4126-41.


Berthod G, Homicsko K, Bouchaab H, Matter M, Cerottini JP, Guggisberg D, Speiser D, Leyvraz S, Michielin O.
Melanoma: a new therapeutic era.
Rev Med Suisse., 2011, 7, 1126-30.


Sala E, Guasch L, Iwaszkiewicz J, Mulero M, Salvadó MJ, Pinent M, Zoete V, Grosdidier A, Garcia-Vallvé S, Michielin O, Pujadas G.
Identification of human IKK-2 inhibitors of natural origin (part I): modeling of the IKK-2 kinase domain, virtual screening and activity assays.
PLoS One., 2011, 6, e16903.


 

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